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  1. Home
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  5. Whole genome sequence of moderate halophilic marine bacterium Marinobacter litoralis SW-45: Abundance of non-coding RNAs
 
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Whole genome sequence of moderate halophilic marine bacterium Marinobacter litoralis SW-45: Abundance of non-coding RNAs

Journal
International Journal of Biological Macromolecules
ISSN
01418130
Date Issued
2019-07-15
Author(s)
Musa H.
Farizul Hafiz Kasim
Universiti Malaysia Perlis
Ahmad Anas Nagoor Gunny
Universiti Malaysia Perlis
Subash Chandra Bose Gopinath
Universiti Malaysia Perlis
Chinni S.V.
Ahmad M.A.
DOI
10.1016/j.ijbiomac.2019.05.003
Abstract
A report on the de novo Whole Genome Sequence (WGS)of Marinobacter litoralis SW-45, a moderately salt-tolerant bacterium isolated from the seawater in Malaysia is presented. The strain has a genome size of 3.45 Mb and is capable of producing halophilic lipase, protease and esterase enzymes. Computational prediction of non-coding RNA (ncRNA)genes in M. litoralis SW-45 was performed using standalone software known as the non-coding RNA characterization (nocoRNAc). In addition, a phylogenetic tree showing the evolutionary relationship between the strain and other members of the genus Marinobacter was constructed using 16SrRNA sequence information. A total of 385 ncRNA transcripts, 1124 terminator region, and 2350 Stress Induced Duplex Destabilization sites were predicted. The current WGS shotgun project has provided the relevant genetic information that may be useful for the strain's improvement studies. This manuscript gives the first description of M. litoralis with a complete genome.
Funding(s)
Ministry of Higher Education
Subjects
  • Halophilic | Marinoba...

File(s)
Research repository notification.pdf (4.4 MB)
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